Here, you can see that Mid body-Aft connection doesn't have serration
Is that line in the first picture even a joint? Might as well be a tool cable for all the evidence to the contrary, and the second is too low-res to even tell anything at all.
Yes. If the join isn't going to open you can treat it with materials to bridge over the discontinuity. If the join is a panel which needs to open regularly in the air e.g landing gear or weapons bay it needs to be aligned for sure. If it opens regularly on the ground e.g. access panels, either it has to be aligned or treated before flight, which greatly increases maintenance times.
There clearly seems to be a bit more to it that that, though. Nobody is going to remove the forward fuselage from the airframe any more regularly than the rear section, yet the joint between the former and the mid fuselage is serrated on the TFX while the seam with the latter isn't. Same type of joint, completely different implementation.
And it's not just a serrated treatment covering a straight joint either. If you look at the forward edge of the upper wing skin, where the panel in front is still missing, you can see that it's the panel edge itself that is serrated.
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